In short, no. A counterclaim may be filed in a Small Claims Court up to the jurisdictional limit (NIS 38,900, as of January 2023), with any excess claimed in a separate action in a Small Claims Court or another court.
Note: Since a corporation cannot file an independent claim in a Small Claims Court (only a counterclaim), any excess claim must be pursued in a separate action in a regular court, not a Small Claims Court.